Introduction to Bioinformatics

Below is the information you will need to complete each of the labs you will do in the course. The lab handouts will be provided for you in class--please do not print out additional copies unless you lose the copy given to you.

Lab 1 - February 10
Summary Using the NCBI and Biology Workbench Sites
Due Date February 17, 2006 (Part of Assignment 2)
Handout Lab 1 Handout
Lab 2 - March 9
Summary Microarray Data Analysis
Due Date March 17, 2006 (Part of Assignment 5)
Handout Lab 2 Handout
Files spospread.txt
spo100.txt
Optional Reading Chu, S., and DeRisi, J., et. al. (1998) “The Transcriptional Program of Sporulation in Budding Yeast.” Science 282: 699-705. [PDF]
Lab 3 - March 16
Summary Protein Structure and Homology Modeling
Due Date March 31, 2006 (Part of Assignment 6)
Handout Lab 3 Handout
Files protein.fasta
Lab 4 - March 31
Summary Proteomics
Due Date April 7, 2006 (Part of Assignment 7)
Handout Lab 4 Handout
Lab 5 - April 7
Summary Multiple Sequence Alignment
Due Date April 21, 2006 (Part of Assignment 8)
Handout Lab 5 Handout
Files random_score.py
matrix_cluster.py
Lab 6 - April 21
Summary Making Phylogenetic Trees
Due Date April 28, 2006 (Part of Assignment 9)
Handout Lab 6 Handout
Files ubiquitin.fasta

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