[filename].rc

File of mesostate codes and energies for each residue for each move in a LINUS simulation. This file can be large! The mesostate codes represent a mapping of φ ψ values into letter codes as described in the Secondary Structure Letter Codes section. The example below is a small portion of a *.rc file for a 25 residue peptide.

?POOLLLLGRLLLLLLLLLLOoGOG -0.522590693617
?POOLLGLRRMMMLLLOOOOOoGOG -2.41963126284
?rJOLLPPRPPPPRLLOOOOOoPOR -5.0788329919
?rGMoLPPRPPPPRLLOOOOOoPOR -4.84662200644
?rGMoLPPRPOLGLLGLLLOOoOoR -1.60491769515
?OOMoLGLRPORGPGRLLLLLGLLR -1.04873880375
?OOOoLGLRPOMLGLRLLLLLLLGR -1.89171119533
?LLLRMrJoPOPGGLRLLLoPGLLG -1.27993821754
?LGGRMrJoPOPGGoLLLLPOOLLG -2.9811215468
.
.
.

Note: Because the rc file can be so large output of the rc file is turned off by default in the distributed version of LINUS. If you would like to turn on output of the rc file include the following command in the sim.set_simulation_parameters() section of your linus.py command file.

        write_rc=1,