Fitzkee Lab Web Archives

Department of Chemistry,
Mississippi State University

This site contains resources on protein structure as well as analysis and simulation tools.

Click here to visit our main lab web page.

Lab Members

• Nicholas Fitzkee

• Abdullah Aborode
• Dan Amarasekara
• Chathuri Kariyawasam
• Tanveer Shaikh
• Radha Somarathne

Lab Programs for Downloading

• LINUS - Monte Carlo Polypeptide Simulations
• ribosome - generate a polypeptide chain
• CHASA - Calculate Conditional Hydrophobic Accessible Surface Area
• Difference Distance Matrix Plot (DDMP) - Compare C-alpha positions

Lab Web Resources

• An RNA Primer
• PROSS - assign PROtein Secondary Structure
• hp - generate a hydrophobicity profile
• unfolded - Unfolded State Accessible Surface Area
• Hemoglobin animations
• Adrian Parsegian's VDW Book
• The Protein Coil Library
• CHASA - Calculate Conditional Hydrophobic Accessible Surface Area
• FiveState - Unfavorable conformations in polyalanine
• ParSe - Predict Phase Separating Domains

Archived Courses

• PNA

• Introduction to Bioinformatics