Fitzkee Lab Web Archives
Department of Chemistry,
Mississippi State University
This site contains resources on protein structure as well as analysis and simulation tools. Many of the resources are quite old and may not work with modern computers, although we try to keep things running as best we can. Think of this as the Fitzkee Lab "basement."
Click here to visit our main lab web page.
We are currently updating this webserver from the original 2005-era hardware to a modern PC. If you are trying to access functionality that is unavailable, please contact Dr. Nick Fitzkee and he'll get you set up!
Lab Members
- Gabriel Alcantara
- Dan Amarasekara
- Chathuri Kariyawasam
- Tanveer Shaikh
Lab Programs for Downloading
- LINUS - Monte Carlo Polypeptide Simulations
- ribosome - generate a polypeptide chain
- CHASA - Calculate Conditional Hydrophobic Accessible Surface Area
- Difference Distance Matrix Plot (DDMP) - Compare C-alpha positions
- Coordinate Comparisons - Distance between identical atoms in a PDB
- Occluded Surface - program for calculating occluded urface area
Lab Web Resources
- An RNA Primer
- PROSS - assign PROtein Secondary Structure
- hp - generate a hydrophobicity profile
- unfolded - Unfolded State Accessible Surface Area
- Coil Library Mesostates - Graphical representation of phi/psi distributions of the Coil Library
- Monte Carlo Movesets - Primer on simple movesets for protein folding
- Adrian Parsegian's VDW Book
- The Protein Coil Library
- CHASA - Calculate Conditional Hydrophobic Accessible Surface Area
- FiveState - Unfavorable conformations in polyalanine
- ParSe - Predict Phase Separating Domains
Archived Courses
